Citation

@Maintainers since v3:

Julie Orjuela (IRD), Aurore Comte (IRD), Sébastien Ravel (CIRAD)

@Legacy Authors:

Julie Orjuela (IRD), Aurore Comte (IRD), Sébastien Ravel (CIRAD), Florian Charriat (INRAE), Tram Vi (IRD, AGI), Francois Sabot (IRD) and Sébastien Cunnac (IRD).

Useful notes

Before launching CulebrONT, you could basecall arbitrarily multiplexed libraries across several Minion or PacBio runs with sequencing quality control and gather the output files by genome for subsequent steps. For ONT, use Dorado and optionally use https://github.com/vibaotram/baseDmux. If you are using PacBio check https://github.com/PacificBiosciences.

Thanks

Thanks to Ndomassi Tando (i-Trop IRD) for his administration support.

The authors acknowledge the IRD i-Trop HPC (South Green Platform) from IRD Montpellier for providing HPC resources that contributed to this work. https://bioinfo.ird.fr/ - http://www.southgreen.fr

Thanks to Yann Delorme for this beautiful logo https://nimarell.github.io/resume

License

Licenced under GPLv3 https://www.gnu.org/licenses/gpl-3.0.en.html Intellectual property belongs to IRD and authors.